Research synthesis

Evaluation of viral RNA extraction methods to detect porcine reproductive and respiratory syndrome and influenza A viruses from used commercial HVAC air filters from swine farms

Nirmala, J. et al. · 2021 · Journal of Aerosol Science · peer-reviewed
Viral particles were eluted from used commercial MERV 14, 15 and 16 barn filters by grinding filter material with liquid nitrogen and extracting RNA with TRIzol reagent. Across 44 filters in service between 12 Aug 2013 and 12 Jul 2017, PRRSV was detected on 27% (12/44) and influenza A on 66% (29/44). PRRSV was also detected on filters taken from farms that were PRRSV-NEGATIVE at the time of filter removal.

Used barn filters were treated as samples rather than as waste. Grinding filter material with liquid nitrogen and extracting RNA with TRIzol reagent proved able to recover viral genetic material from spent commercial MERV 14, 15 and 16 media. Across 44 filters that had been in service between August 2013 and July 2017, PRRSV was detected on 27 percent and influenza A on 66 percent. Influenza turned up on more than twice as many filters as PRRSV.

One result carries more weight than the prevalence figures. PRRSV was detected on filters taken from farms that were PRRSV negative at the time the filters came out. The virus reached the building, the filter held it, and the herd stayed clean. Field evidence for filtration usually arrives as a statistic about outbreaks that did not happen, which is a real but indirect form of proof; this is the material itself, recovered from the media that stopped it. It is also evidence that virus was moving between herds in the region during those years, consistent with the long distance transport work of Dee in 2009 and Otake in 2010.

Two limits define how far the finding reaches. Detection was by RNA and infectivity was not tested, so what was recovered is genetic material rather than demonstrated live virus, and the distinction should survive into any statement made about it. The study is also primarily a methods paper: its contribution is a working elution protocol where none existed, and the percentages describe one sample set rather than a national picture. What it opens up is the possibility of treating spent filters as a passive surveillance sample, which turns a consumable already being paid for into a record of what the site was exposed to.

Source Nirmala, J. et al. 2021. Evaluation of viral RNA extraction methods to detect porcine reproductive and respiratory syndrome and influenza A viruses from used commercial HVAC air filters from swine farms. Journal of Aerosol Science 151:105624. doi:10.1016/j.jaerosci.2020.105624
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